Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015944651.1_cds_XP_016487410.1_78142
CDS Infomation

[gene=LOC107807517] [db_xref=GeneID:107807517] [protein=shikimate O-hydroxycinnamoyltransferase-like] [protein_id=XP_016487410.1] [location=join(28761..29186,30561..31559)] [gbkey=CDS]
Sequence

ATGGGTGCCAAAAGGGACTTCAATGTGAATGTGATCAAAACTGAGGTGGTGGCAGCATCG
TTGCCAATGCAAGAGCATTGGCTACCACAGTCAAATCTTGATTTGCTCTTGCCTCCAATG
GACGTTGGAGTTTTCATTTGTTATCAGAACCCCATTATTTCTGGGTTACCAAAATATTCA
TTTGGGTCAATGATCAAAGTTCTTAAGGTTTCTTTGGCTGAAACCTTGGTTTCCTATTAT
GCATTTGCAGGGGAGTTAGTTCAGAACCTTGCTGGAGAGCCCGAAATTCTTTGCAACAAT
GCGGGAGTCAATTTCACAGAAGCTTGGGCTGATGTAGAGCTCAAAGAAATCAACTTGTAT
AATCCAGATGAAAGCATAGAGGGTAAGCTTGTACCAAAGAAGAAGCACGGTGTACTAGCC
GTTCAGGCTACACATCTCAAATGTGGGGGAATAGTGGTGGCTTGTACATTTGATCATAGA
GTTGCTGATGCTTATTCAACCAACTTGTTTCTCGTATCATGGGCAGAAATAGCTCAGTCC
AAACCACTATCTCAGCTCCCATCTTTCCGACGTTCCTTTCTTTTTCCACGGCGTCCCTCC
TACTACGATCCCTTGGTAATAGACAGCATGTATATACCTATCTCTGCCCTAAAACAAGAA
ACACGTGCTGTCACAAATATTGATGATAATGATCAAGTTATAAGCAGAATTTACTATGTC
AAGGCTGAAGACATCAGCCGCCTCCAATCATTAGCAAATAGTTGTAATAACGACATGATT
AGCACAAAATTCCACAGGTTTACTAAGCTTGAAACATTCAGTGCTTTCCTATGGAAAACT
ATAGCCAATGGGATGGAAAACAATAGTACTCCTAATTACGAGAACTTCAGGTTTGGGATT
GTGGTTAATGGTAGGAGTAGATTGAGCGATGGAGATGAAGAACAAGCCAAGGTACTAAAA
GGGTATTTTGGGAATGTTCTTTCCATCTCATTTGGTGAGAAGAAAGTGGAGAAACTAAAG
GAGAAACCTTTAAGTTGGGTAGCAAGAGCAGTTCATGAGTTTCTTGAACATGCAGAAACT
AAAGAACATTTCCTTGGGTTAATAAATTGGGTGGAAGATCATCGTCCAGAACCAGCTTTA
GCAAGAATCTACGCCACAAATGAAGATGCACCGGCGGTGGTGGTGTCGTCGGGGCAACAG
TTTCCGGTGGGGAAGATTGATTTTGGATGGGGAGAGCCAGTGTTTGGGTCATATCATTTT
CCATGGGAAGGGAAAGCAGGATATGTGATGCCAATGCCGAGTCCTAAAGGAAATGGAGAT
TGGGTTGTTTATATGCACATGCTGAAATGGCAGTTGGAATTGGTTGAGGCCTCTGCGTCC
AATGTGTTCAAGCCCCTGACTGCAGATTATCTCAACTTTAAGTAA

Peptide Sequence

PEP ID

XP_016487410.1
PEP Infomation

PREDICTED: shikimate O-hydroxycinnamoyltransferase-like [Nicotiana tabacum]
Sequence

MGAKRDFNVNVIKTEVVAASLPMQEHWLPQSNLDLLLPPMDVGVFICYQNPIISGLPKYS
FGSMIKVLKVSLAETLVSYYAFAGELVQNLAGEPEILCNNAGVNFTEAWADVELKEINLY
NPDESIEGKLVPKKKHGVLAVQATHLKCGGIVVACTFDHRVADAYSTNLFLVSWAEIAQS
KPLSQLPSFRRSFLFPRRPSYYDPLVIDSMYIPISALKQETRAVTNIDDNDQVISRIYYV
KAEDISRLQSLANSCNNDMISTKFHRFTKLETFSAFLWKTIANGMENNSTPNYENFRFGI
VVNGRSRLSDGDEEQAKVLKGYFGNVLSISFGEKKVEKLKEKPLSWVARAVHEFLEHAET
KEHFLGLINWVEDHRPEPALARIYATNEDAPAVVVSSGQQFPVGKIDFGWGEPVFGSYHF
PWEGKAGYVMPMPSPKGNGDWVVYMHMLKWQLELVEASASNVFKPLTADYLNFK

Transcript Sequence

Gene sequence data has not been registered.